Analysis of the NMR Spin-Spin Coupling Mechanism Across a H-Bond: Nature of the H-Bond in Proteins

نویسندگان

  • Tell Tuttle
  • Anan Wu
  • Elfi Kraka
  • Dieter Cremer
چکیده

The NMR spin-spin coupling constants (SSCCs) across the H-bond in proteins are sensitive to the electronic structure of the H-bonded system, i.e., the N-H‚‚‚OdC group in proteins. The spin-spin coupling mechanism across the H-bond involves a strong electric field effect, steric exchange interactions, and some weak covalent effects (transfer of electronic charge). The electric field effect is reflected by one-orbital contributions to the SSCC and can be tested with the help of probe charges. A negative charge opposite to the N-H bond leads to increased polarization of the N-H bond, a larger contact density at the N nucleus, and a stronger FC coupling mechanism for those SSCCs involving the N nucleus. Similarly, a positive charge opposite to the OdC bond, distorts the O density into the direction of the external charge and in this way decreases the spin density at the O nucleus. All SSCCs across the H-bond depend primarily on the electric field effect and two-orbital steric exchange interactions. The lone pair contributions to the Fermi contact term of 2hJ(ON) (and to a lesser extent 3hJ(CN)) provide a direct measure on possible covalent contributions in the form of charge-transfer interactions. According to calculated charge-transfer values and lone-pair contributions to SSCC 2hJ(ON), the covalent contribution to the H-bond is rather small (less than 15% at 1.9 Å for a bending angle â(COH) of 120°). The zeroth-order density and the spin-spin coupling mechanism, which depends largely on the first-order spin density, both describe the H-bond as being electrostatic rather than covalent. The electric field effect largely determines the geometrical dependence of the SSCCs of a hydrogen-bonded system.

برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

منابع مشابه

Investigation of the NMR spin-spin coupling constants across the hydrogen bonds in ubiquitin: the nature of the hydrogen bond as reflected by the coupling mechanism.

The indirect scalar NMR spin-spin coupling constants across the H-bonds of the protein ubiquitin were calculated, including the Fermi contact, the diamagnetic spin-orbit, the paramagnetic spin-orbit, and the spin dipole term, employing coupled perturbed density functional theory in combination with the B3LYP functional and different basis sets: (9s,5p,1d/5s,1p)[6s,4p,1d/3s,1p] and (11s,7p,2d/5s...

متن کامل

Theoretical study of - stacking interactions in substituted-coronene||cyclooctatetraene complexes: A system without direct electrostatic effects of substituents

Stability of the ;-; stacking interactions in the substituted-coronene||cyclooctatetraene complexes wasstudied using the computational quantum chemistry methods (where || denotes ;–; stackinginteraction, and substituted-coronene is coronene which substituted with four similar X groups; X =OH, SH, H, F, CN, and NO). There are meaningful correlations between changes of geometricalparameters and t...

متن کامل

ادغام الگوی شبکه‌ای هولشتاین - کاندو برای توصیف نظریه ابررساناهای دمای بالا

  It is a common knowledge that the formation of electron pairs is a necessary ingredient of any theoretical work describing superconductivity. Thus, finding the mechanism of the formation of the electron pairs is of utmost importance. There are some experiments on high transition temperature superconductors which support the electron-phonon (e-ph) interactions as the pairing mechanism (ARPES),...

متن کامل

Ab Initio Quantum Chemical Studies of 15N and 13C NMR Shielding Tensors in Serine and Complexes of Serine- nH2O: Investigation on Strength of the CαH…O Hydrogen bonding in the Amino Acid Residue.

In this paper, the hydrogen bonding (HB) effects on the NMR chemical shifts of selected atoms in serineand serine-nH2O complexes (from one to ten water molecules) have been investigated with quantummechanical calculations of the 15N and 13C tensors. Interaction with water molecules causes importantchanges in geometry and electronic structure of serine.For the compound studied, the most importan...

متن کامل

Platinum-oxygen Bond Formation: Kinetic and Mechanistic Studies

Reaction of [PtMe(C^N)(SMe2)] (C^N = 2-phenylpyridinate (ppy); 1a, C^N = benzo[h]quinolate, (bhq); 1b) with hydrogen peroxide gives the platinum(IV) complexes trans-[PtMe(OH)2(C^N)(H2O)] (C^N = ppy; 3a, C^N = bhq, 3b) bearing platinum-oxygen bonds. The Pt(II) complexes 1a and 1b have 5dπ(Pt)→π*(C^N) MLCT band in the visible region which is used to easily follow the kinetic of its reaction with ...

متن کامل

ذخیره در منابع من


  با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید

برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

عنوان ژورنال:

دوره   شماره 

صفحات  -

تاریخ انتشار 2004